k-conforming Regions Locating Utility

k-conforming regions will be determined in the multiple alignment as the corresponding positions in the "human" sequence, which will also be assumed to represent the known center for the regions.   More information

The alignment to be used is: Old beta-globin alignment New beta-globin alignment .

This alignment will be examined from: to: in "human",

and these offsets are relative to:		The beginning of the human sequence file
		The beginning of GenBank's HUMHBB locus.

(NOTES:   If you have chosen to use the "Old beta-globin alignment", then these two origins are the same, while the "New beta-globin alignment" begins 2687 bp 5' to HUMHBB. The output is always labeled relative to the beginning of the sequence files used in the alignment.)

The maximal number of mismatches any sequence may have with "human" is: .

Minimal length of a k-conforming region necessary for it to be recognized is: .

Minimal number of sequences which must be active (already started and not yet ended) within a region must be: .

Please choose the method of gap treatment:

• General (gaps are ordinary characters)
• Restricted (gaps are not permitted in center)
• Strict (gaps prohibited within regions)

The results of this tool should be presented as:

List Image

Press to determine the regions, or to restore defaults.