Viewing Pairwise Alignments with Laj

Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites containing additional information about particular regions.

Each button below will start a Java applet to view the indicated data.

Note:  This applet requires at least Java 1.2, and preferably Java 1.3 or higher. For best compatibility, Sun's Java Plug-in is recommended. Please see Installing the Java Plug-in for more information.

Laj is available for download so you can use it to display your own data, either on your web site or as a stand-alone application on your computer.

$Revision: 1.20 $$Date: 2005/12/14 21:58:03 $