Materials for Lecture 2

This lecture centered on the analysis (by computer) of a 20 kb piece of human genomic sequence.

  • sequence
  • RepeatMasker summary
  • RepeatMasker results
  • Masked sequence
  • GenScan output
  • positions 10000-11000 of the masked sequence
  • sample of blastn output searching dbEST for that 1 kb fragment
  • one of the 40-50 ESTs that hit the 1 kb fragment
  • sample of blastx output searching the nonredundant protein database for that 1 kb fragment
  • a 1 kb fragment from another genomic region
  • sample of blastx output for that other 1 kb fragment