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Check exon orientation.The two sequences are not really similar. Please try an exact aligning method. 333333??B?Y@?I = %d memory problem. The files are identical.EF???mergetmp1!=((void *)0)???ffffff?Y@ffffff???GTAGCTACblest.c: intron orientation not initialized.blest.c: Corrupted exon list: could not find previous.??$Id: blest.init.c,v 1.13 2000/09/15 20:08:25 florea Exp $%s [[SXWFCRT]=] S - similarity threshold per exon (default: .9) X - value for terminating word extensions (default: 12) W - word size (default: 12) F - fudge factor for MSP score threshold (default: 1.4) C - min percent coverage of the EST (default: .8) R - early threshold for coverage (default: .6) T - overall similarity threshold (default: .95) SXWFECRTcutoff must be within [3,10].W must be positive.W must be <= 15.X must be positive.T must be in the range [.0,1.0].F must be in the range [.8,3.0].C must be in the range [0.1,1.0].R must be in the range [0.1,1.0].S must be in the range [.5,1.0].The first sequence is not a DNA sequence.wANOMALY%.29s%s : not a DNA sequence %s : est longer than genomic sequence.%s : internal gap %s : less than %d%% coverage %s : global similarity < %d%% %s %d bp (complement)blest.init.c: fclose failed.?@??Y@$Id: scriptlib.c,v 1.6 1999/03/23 22:14:20 schwartz Exp $Something wrong when dividing copy %d replace %c by %c skip (second sequence) %d insert %c %d skip (first sequence) %d delete %d %6d . : . %6d %s %s %6d %s TROUBLE!!! startx: %5d, starty: %5d TROUBLE!!! x: %5d, y: %5d $Id: splice.c,v 1.2 2000/09/15 18:45:53 florea Exp $splice_donorsplice.cX[j]+CCf[j]!=0Y@splice_donor_uniY@splice_acceptorCCb[j]+X[j]!=0Y@splice_acceptor_uniY@splice.c: Negative value in stepct().$Id: args.c,v 1.11 2000/05/19 15:33:32 webb Exp $Improper command option: '%s'.Available options: %s get_argvalget_fargvalget_cargvalCall ckargs() before %s. %s %s%c must be non-negative.%c must be positive.M must be positiveI must be negativeV must be negativetransversions penalized less than transitions?O must be positiveE must be positive$Id: dna.c,v 1.13 2000/05/19 15:35:05 webb Exp $ACGT[dd[@ <$ABCDGHKMNRSTVWXYDNA_scores@$Id: misc.c,v 1.22 2000/03/15 21:27:12 schwartz Exp $%s%s: : %s Cannot open %s.ckallocmisc.c(long)amount >= 0Ran out of memory trying to allocate %lu.bad ftell: %sbad fseek: %sckrealloc failedpclose failed (status %d)$Id: seq.c,v 1.35 2000/05/17 18:47:36 schwartz Exp $%d,%dseq_open: contradictory flags: SEQ_DISALLOW_AMB|SEQ_ALLOW_AMBimproper positions specification: %srcould not read from %s$Id: seq_read.c,v 1.5 2000/05/17 18:47:36 schwartz Exp $cannot ungetc '%c'cannot appendnon-DNA character '%c' in sequence '%s'range [%d,%d] incommensurate with sequence [%d,%d]rcannot open '%s'%d%d$Id: discrim.c,v 1.9 2000/05/19 15:34:45 webb Exp $ACGTNXacgtnxIllegal character '%c' in sequence file. $Id: blast_table.c,v 1.35 2000/05/19 15:34:19 webb Exp $@pruned hit of score %d at (%d,%d) $Id: blast_filter.c,v 1.15 2000/05/17 19:20:00 webb Exp $%d %d %d %d %d $Id: mkencoding,v 1.6 1999/09/23 21:31:33 schwartz Exp $ TVGH CD M KN YSA BWXR tvgh cd m kn ysa bwxr ACGTcharvec_initcharvec.ctcharvec_finicharvec_needt->alloccharvec_morecharvec_appendcharvec_fit$Id: prnt.c,v 1.25 2000/05/19 15:36:03 webb Exp webb $subseq_labelprnt.csize > 0 (subsequence #%d)- (reverse complement)ACGT#:lav d { "print_align_header A C G T %5d O = %d, E = %g, K = %d, L = %d" } Inconsistent use of `f`, `t`, `F', `T' args.s { "%s%s" %d %d "%s%s" %d %d } h { "%s%s" "%s%s%s" } a { s %d b %d %d e %d %d f %d l %d %d %d %d %d } a { s %d b %d %d e %d %d l %d %d %d %d %d } %d %d %d %d $Id: edit.c,v 1.18 2000/03/15 21:27:12 schwartz Exp $edit_op_inc_lastedit.ces->num > 0num=%d size=%d edit_script_prntthis != 0?IDR%d:%c:%d edit_script_putop != 0edit_script_more: bad opcode %d:%des_indel_len: cannot happen!Ѓ"2BRbrŠҊ"2BRbr‹ҋ"2BRbr  W(  PL0ooo%Edd+<:i,x:_y5_s-n-Y=t(;-s$B?- 1!I"_#v%&1234 5" 6< 8U 9o ; = > ? 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