These tools and their applications have been described in:
Florea, L., Riemer, C., Schwartz, S., Zhang, Z., Stojanovic, N., Miller, W., and McClelland, M. (2000) "Web-based visualization tools for bacterial genome alignments" --- Nucleic Acids Research 2000, 28(18), 3486-96. (PubMed).
McClelland, M., Florea, L., Sanderson, K., Clifton, S.W., Parkhill, J., Churcher, C., Dougan, G., Wilson, R.K., Miller, W. (2000) "Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella and three Salmonella enterica serovars Typhimurium, Typhi and Paratyphi A" --- Nucleic Acids Research 2000, 28(18), 4974-86. (PubMed).
Florea, L., McClelland, M., Riemer, C., Schwartz, S., Miller, W. (2003) "EnteriX 2003:
visualization tools for genome alignments of Enterobacteriaceae" ---
Nucleic Acids Research 2003, 31(13), 3527-32.
(PubMed).