What's New in PipTools
- 2001-Sep-18
-
- Bug fix: strong-hits was computing segment lengths 1 nt too short.
- Strong-hits has a new "-exons-only" option that instructs it to
ignore the intervals for genes and translated regions when looking
for overlaps in an exons file.
- 2001-Aug-14
- Programs
- Bug fix: exons2mrna did not read arguments correctly on some systems.
- Minor bug fixes and/or improvements in genscan2exons, strong-hits,
transform-pos, sort-exons, find-cpg, and parsing of interval files.
- Better compatibility with older compilers.
- Makefile now runs piplib/Makefile correctly, and is more Windows-friendly.
- Perl source files are named with ".pl" to avoid confusion.
- Documentation
- Sample installation walk-through for Win98.
- Minor additions and clarifications in other documents.
- 2001-Jul-5
-
- The find-cpg program is now case-insensitive.
- 2001-Jun-27
-
- In the labeled underlay format (produced by genscan2underlays
and exons2underlays via the -laj option), the "dummy"
item is no longer needed.
- Misc. minor improvements to the documentation.
Cathy Riemer, September 2001