Readings on Detection Methods for Binding-Site Clusters
A class project on this topic could be limited to a survey of what's known.
Development and evaluation of a new method is recommended as a longer term
research project, e.g., for a Ph.D. dissertatation.
A Few Relevant Publications:
Liu et al.,
Pacific Symposium on Biocomputing, 2001.
GuhaThakurta and Stormo,
Bioinformatics, 2001.
Frith et al.,
Bioinformatics, 2001.
Kel-Margoulis et al.,
Pacific Symposium on Biocomputing, 2002.